Applied Bioinformatics Engineer, Pipelines & AI
US: Boston MA Lilly Seaport Innovation Center, United States
USD 166K-266K Senior-level Full Time
Tasks
- Build MCP connectors for LLM based agents
- Build reproducible statistical genetics workflows
- Collaborate with scientists and engineers
- Containerize pipelines for portability and reuse
- Coordinate integration with platform and engineering teams
- Define evaluation standards for AI solutions
- Develop multi omics analytical pipelines
- Implement pipeline tests and documentation
- Integrate LLM workflows with data sources and pipelines
- Perform code reviews and knowledge sharing
- Prototype agentic AI workflows for analytical tasks
- Translate partner analytical needs into pipeline requirements
- Wrap scientist scripts into production tools
Perks/Benefits
- N/A
Skills/Tech-stack
API Integration | AWS | Agentic Workflows | Azure | BAM | BED | Bcftools | Biomedical Ontologies | Burden testing | Code review | Colocalization | Docker | Fine-mapping | GCP | GTF | GWAS | Genomics | Git | Graph Databases | LLM | Linux | MCP | Mendelian randomization | NGS | Natural Language | Natural language interfaces | Nextflow | Plink | Prompt engineering | Proteomics | Python | R | Relational databases | Samtools | Single cell sequencing | Single-cell | Singularity | Snakemake | Spatial transcriptomics | Unit Testing | VCF | VCF processing | WDL
Education
Regions
Countries
States
Cities
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