Lead Bioinformatics Engineer
Tasks
- Architect genomic pipelines
- Build automated regression testing frameworks
- Containerize workflows
- Create and execute software validation plans
- Deploy pipelines on AWS
- Implement genomic workflow code
- Integrate pipelines with LIMS and EMR
- Lead code reviews and mentoring
- Perform pipeline benchmarking and profiling
- Set up CI/CD workflows
Perks/Benefits
- Career advancement opportunities
- Education assistance
- Hybrid work schedule
- Mental health program
- Vacation and Health Flex Time
- Well-being programs
Skills/Tech-stack
AWS | AWS Batch | AWS ECS | AWS Lambda | AWS Step Functions | Amazon S3 | BAM | BED | BWA | Bash | CI/CD | CloudFormation | CloudWatch | DeepVariant | Docker | Ensembl VEP | FASTQ | FHIR | GATK | Git | GitHub Actions | HL7 | Infrastructure as Code | Integration Testing | Jenkins | LIMS | Mutect2 | MySQL | Nextflow | NoSQL | PostgreSQL | Pytest | Python | SQL | Singularity | Snakemake | SnpEff | Step Functions | Terraform | Unit Testing | VCF | VarDict | “as-code”
Education
Bachelor of Engineering | Bachelor of Science | Master of Science
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