Jobs at Flagship Pioneering, Inc.

We are Flagship Pioneering We are a biotechnology company that invents platforms and builds companies that change the world. Pioneering Partnerships…

• Website
• LinkedIn
• @FlagshipPioneer 𝕏
• Search

Employment types

Full Time (69) Internship (1)

Hiring regions

North America (67) Europe (3)

Common tags

Machine Learning (62) Python (56) Biology (43) Computer Science (41) PhD (41) Engineering (37) Research (35) AWS (30) PyTorch (30) Pipelines (29)

Perks/benefits

Team events (56) Startup environment (53) Career development (26) Health care (7) Conferences (7) 401(k) matching (3) Insurance (3) Salary bonus (2) Flex hours (2) Competitive pay (2)

Experience levels

Senior-level / Expert (47) Mid-level / Intermediate (12) Executive-level / Director (3) Entry-level / Junior (3)

Above overview represents hiring data aggregated over the past 6 months

• 

  Boston, MA USA Boston, MA USA Full Time

  USD 123K - 228K * USD 123K+ *

  Flagship Pioneering, Inc.

  AI/ML Engineer, Computational Biology

  AWS Biology Computer Science Data analysis Deep Learning Engineering Generative AI +15
  401(k) matching Career development Health care Insurance Startup environment +1
• 

  Cambridge, MA USA Cambridge, MA USA Full Time Mid Mid-level

  USD 93K - 174K * USD 93K+ *

  Flagship Pioneering, Inc.

  Associate Director of Controls Engineering

  APIs Architecture Engineering FastAPI Industrial OOP Python +2
  Career development Startup environment Team events
• 

  Cambridge, MA USA Cambridge, MA USA Full Time Senior Senior-level

  USD 63K - 147K * USD 63K+ *

  Flagship Pioneering, Inc.

  Lead, Applied Machine Learning (Materials Science)

  Architecture AWS Chemistry Computer Science Data visualization Deep Learning Generative AI +13
  Startup environment
• 

  Watertown, MA USA Watertown, MA USA Full Time Senior Senior-level

  USD 63K - 147K * USD 63K+ *

  Flagship Pioneering, Inc.

  Senior/Principal Scientist, Computational Biology

  AWS Biology Classification Computer Science Deep Learning ggplot2 HPC +9
  Startup environment Team events
• 

  Cambridge, MA USA Cambridge, MA USA Internship Entry Entry-level

  Flagship Pioneering, Inc.

  AI Research Scientist Intern (Summer 2025)

  AWS Azure Biology Chemistry GCP Generative modeling Git +8
  Team events