Associate Computational Scientist-Psychiatry Dr. Kaji
Tasks
- Analyze single cell and multiomic datasets
- Collaborate on experimental design and perturbation targets
- Conduct differential expression and variance partitioning
- Develop reproducible analysis pipelines
- Implement genotype imputation workflows
- Infer gene regulatory networks and signaling pathways
- Integrate multiomic datasets
- Map organoid cell states to reference atlases
- Perform genotype based demultiplexing
- Perform single cell and spatial transcriptomics analysis
- Perform trajectory inference and lineage mapping
- Process raw sequencing data
- Run genotype quality control and format standardization
Perks/Benefits
- N/A
Skills/Tech-stack
Alignment | Differential expression | FASTQ | Gene Regulatory Networks | Genome Sequencing | Genotype demultiplexing | Genotype quality control | Imputation | PEGASUS | Pathway Analysis | Python | Quality Control | Quantification | R | RNA Sequencing | SNP Array | ScANVI | ScATAC-seq | ScVI | Scanpy | Signal pathway analysis | Single Nucleus RNA Sequencing | Single cell multiome | Single-cell | Single-cell RNA-sequencing | SnapATAC2 | Spatial transcriptomics | Squidpy | Trajectory inference | VCF | VCF harmonization | Variance partitioning | Whole-genome sequencing
Education
Roles
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