Senior Computational Scientist / Scientific Software Engineer for Cryo-ET Workflow Development
Tasks
- Apply software engineering practices version control testing profiling optimization logging error handling
- Architect software for workstations HPC and cloud
- Collaborate on machine learning image analysis visualization projects
- Design scalable computational pipelines
- Develop APIs and user interfaces for data analysis
- Implement benchmarking and tool integration
- Lead computational research projects with minimal supervision
- Maintain automated reproducible workflows
- Optimize cryo ET workflows for large scale datasets
- Refactor workflows into modular components
- Scale distributed HPC and cloud processing
- Support deployment troubleshooting and standardization
- Write code and user documentation
Perks/Benefits
- N/A
Skills/Tech-stack
AreTomo | CSS | Cloud Computing | Containerization | Cryo-electron microscopy | Cryo-electron tomography | CryoSPARC | Data Processing | Data Retrieval | Data Storage | Distributed Computing | Dynamo | EMAN2 | Electron microscopy | Electron tomography | Error Handling | HTML | High Performance | High-Performance Computing | Image analysis | JavaScript | Linux | Logging | Machine Learning | Object-relational mapping | Performance Computing | Pipeline Development | Profiling | PyTom | Python | Relational mapping | Relion | SQL | Segmentation | SerialEM | Shell Scripting | Subtomogram Averaging | Template matching | Testing | Tomographic reconstruction | Tomography 5 | Version control | WARP | Workflow automation
Education
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