Senior Bioinformatics Data Engineer (Consultant)
Raleigh, United States
USD 168K-200K (estimate) Senior-level Full Time
Tasks
- Automate repetitive processes into workflows and tooling
- Build ingestion pipelines for genomics vendors
- Conduct adversarial design and code reviews
- Deliver FastAPI endpoints and platform infrastructure
- Develop dbt Silver to Gold transformations
- Ensure reproducibility with CI automated tests and no notebook production
- Extract transformation rules from legacy R and PySpark
- Implement SDTM and ADaM ingestion paths
- Tune Redshift performance and instrumentation
Perks/Benefits
- Background check
- Code review feedback loops
- Compliance training
- Embedded pair working model
- VPN Access
Skills/Tech-stack
ADaM | AWS ECS | AWS ECS Fargate | AWS Glue | AWS Glue Catalog | AWS S3 | Amazon Redshift | Apache Airflow | Automated testing | CDISC | CI on PR | CI/CD | CNV | CloudFormation | DBT | Dagster | Data Quality | Docker | ECS Fargate | ETL | FastAPI | Glue Catalog | HGVS | Iceberg | Ingestion pipelines | Lakehouse Architecture | Observability | Prefect | PySpark | Python | R | SDTM | SQL | Schema Design | VAF | VCF
Education
Bachelor of Engineering | Bachelor of Science | Master of Science
Regions
Countries
States
Cities
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